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#simulation

11 posts9 participants2 posts today

A new COPASI version 4.45 was released.

New features:
- tool to parse arbitrary ODEs into reaction-based model.
- menu entry allowing definition and running of external tools (scripts ,etc)

Many bug fixes, including:
- better scaling for MCA in the presence of small compartment volumes
- fixed intervals for time courses running backwards (negative time)
- improvement in steady state criteria in models with conserved moieties
- Improved parsing SED-ML & SBML

copasi.org/Download/
#SystemsBiology #Chemistry #Simulation #Dynamics

copasi.orgCOPASI: DownloadCOPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

A complicated history for this one, with the developer Rocket Jump Technology no longer existing as a business. The previous iteration of the game named King under the Mountain went open source back in January 2024, and now what was to be the big revamp is also open source.
gamingonlinux.com/2025/04/colo

GamingOnLinux · Colony building sim Mountaincore is now free to play and open sourceBy Liam Dawe

LIBRITOPIA: Librarian Simulator is a game that based on the name, probably doesn't need an intro. As part of a wave of these simulator games (there's suddenly quite a lot of them), here you manage a library.
gamingonlinux.com/2025/04/libr

GamingOnLinux · LIBRITOPIA: Librarian Simulator recently added a Linux versionBy Liam Dawe