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#ImageAnalysis

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Karsten Schmidt<p>To avoid a massive OpenCV dependency for a current project I'm involved in, I ended up porting my own homemade, naive optical flow code from 2008 and just released it as a new package. Originally this was written for a gestural UI system for Nokia retail stores (prior to the Microsoft takeover), the package readme contains another short video showing the flow field being utilized to rotate a 3D cube:</p><p><a href="https://thi.ng/pixel-flow" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">thi.ng/pixel-flow</span><span class="invisible"></span></a></p><p>I've also created a small new example project for testing with either webcam or videos:</p><p><a href="https://demo.thi.ng/umbrella/optical-flow/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">demo.thi.ng/umbrella/optical-f</span><span class="invisible">low/</span></a></p><p><a href="https://mastodon.thi.ng/tags/ThingUmbrella" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ThingUmbrella</span></a> <a href="https://mastodon.thi.ng/tags/OpticalFlow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpticalFlow</span></a> <a href="https://mastodon.thi.ng/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageAnalysis</span></a> <a href="https://mastodon.thi.ng/tags/ComputerVision" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ComputerVision</span></a> <a href="https://mastodon.thi.ng/tags/TypeScript" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>TypeScript</span></a> <a href="https://mastodon.thi.ng/tags/JavaScript" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>JavaScript</span></a></p>
Albert Cardona<p>Beth Cimini at the Broad Institute (MIT) is hiring:</p><p>1. Image Analysis Associate<br><a href="https://docs.google.com/document/d/1Z5r-a-uDJz9UqCH7vt2cLKcAxjydoSThDXhWejWWF8Y/preview?tab=t.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">docs.google.com/document/d/1Z5</span><span class="invisible">r-a-uDJz9UqCH7vt2cLKcAxjydoSThDXhWejWWF8Y/preview?tab=t.0</span></a></p><p>2. Software Engineer<br><a href="https://broadinstitute.avature.net/en_US/careers/JobDetail/Associate-Software-Engineer-Free-and-Open-source-Biological-Imaging-Software/19435" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">broadinstitute.avature.net/en_</span><span class="invisible">US/careers/JobDetail/Associate-Software-Engineer-Free-and-Open-source-Biological-Imaging-Software/19435</span></a></p><p><a href="https://mathstodon.xyz/tags/PhDJobs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PhDJobs</span></a> <a href="https://mathstodon.xyz/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageAnalysis</span></a> <a href="https://mathstodon.xyz/tags/DataScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DataScience</span></a></p>
Beth Cimini 🔬💻📊<p>Have you ever analyzed a <a href="https://bsky.brid.gy/hashtag/microscope" rel="nofollow noopener noreferrer" target="_blank">#microscope</a> image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! <a href="https://bsky.brid.gy/hashtag/microscopy" rel="nofollow noopener noreferrer" target="_blank">#microscopy</a> <a href="https://bsky.brid.gy/hashtag/imageanalysis" rel="nofollow noopener noreferrer" target="_blank">#imageanalysis</a> <a href="https://bsky.brid.gy/hashtag/bioimageanalysis" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a> <a href="https://forum.image.sc/t/2024-image-analysis-survey/103634" rel="nofollow noopener noreferrer" target="_blank">forum.image.sc/t/2024-image...</a><br><br><a href="https://forum.image.sc/t/2024-image-analysis-survey/103634" rel="nofollow noopener noreferrer" target="_blank">2024 Image Analysis Survey</a></p>
Vis Lab @ Khoury, Northeastern<p>Khoury vis member <span class="h-card" translate="no"><a href="https://vis.social/@racquel" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>racquel</span></a></span> co-authored "Opening the Black Box of 3D Reconstruction Error Analysis with VECTOR", being presented Thursday at 10:15 in the short papers on text and multimedia:</p><p><a href="https://ieeevis.org/year/2024/program/paper_v-short-1144.html" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">ieeevis.org/year/2024/program/</span><span class="invisible">paper_v-short-1144.html</span></a><br><a href="https://arxiv.org/abs/2408.03503" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">arxiv.org/abs/2408.03503</span><span class="invisible"></span></a></p><p><a href="https://vis.social/tags/IEEEVIS" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>IEEEVIS</span></a> <a href="https://vis.social/tags/3D" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>3D</span></a> <a href="https://vis.social/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageAnalysis</span></a> <a href="https://vis.social/tags/datavisualization" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>datavisualization</span></a> <a href="https://vis.social/tags/research" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>research</span></a></p>
EuroBioImaging<p>Want to use <a href="https://mastodon.social/tags/Python" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Python</span></a> for <a href="https://mastodon.social/tags/imageanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>imageanalysis</span></a>? Join the eRImote training course: "Intro to <a href="https://mastodon.social/tags/BioImage" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>BioImage</span></a> Analysis for Life Scientists" organised by <a href="https://mastodon.social/tags/EuroBioImaging" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EuroBioImaging</span></a> Nodes. </p><p>🗓️Oct. 7-9</p><p>📍Sweden, France, Portugal </p><p>Innovative format w/common lectures &amp; on-site experts. </p><p>Register⤵️</p><p><a href="https://eurobioimaging.eu/events/intro-to-bioimage-analysis-with-python-for-life-scientists-a-distributed-in-person-training-course/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">eurobioimaging.eu/events/intro</span><span class="invisible">-to-bioimage-analysis-with-python-for-life-scientists-a-distributed-in-person-training-course/</span></a></p>
Debora Weber-Wulff<p>"What’s in a picture? Two decades of image manipulation awareness and action" - a great read by Mike Rossner on Retraction Watch about image manipulation:</p><p><a href="https://retractionwatch.com/2024/08/12/whats-in-a-picture-two-decades-of-image-manipulation-awareness-and-action/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">retractionwatch.com/2024/08/12</span><span class="invisible">/whats-in-a-picture-two-decades-of-image-manipulation-awareness-and-action/</span></a> </p><p><a href="https://fediscience.org/tags/AcademicIntegrity" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AcademicIntegrity</span></a> <a href="https://fediscience.org/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageAnalysis</span></a></p>
Harald Klinke<p>The Digital Humanities Team at the University of Vienna and the Ottoman Nature in Travelogues (ONiT) project are hosting a <a href="https://det.social/tags/hackathon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>hackathon</span></a> focused on analyzing texts, images, and multimodal sources.</p><p>Thursday, November 14, 9:00 CET to Friday, November 15, 15:00 CET<br><a href="https://dh.univie.ac.at/hackathon/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">dh.univie.ac.at/hackathon/</span><span class="invisible"></span></a><br><a href="https://det.social/tags/DigitalHumanities" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DigitalHumanities</span></a> <a href="https://det.social/tags/ComputationalHumanities" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ComputationalHumanities</span></a> <a href="https://det.social/tags/TextAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>TextAnalysis</span></a> <a href="https://det.social/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageAnalysis</span></a></p>
David Mason<p><span class="h-card" translate="no"><a href="https://mastodon.social/@brembs" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>brembs</span></a></span> Very curious to know more! Presumably there is some live <a href="https://mas.to/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageAnalysis</span></a> going on to detect velocity and move the ball accordingly?</p>
💧🌏 Greg Cocks<p>Alluvial Fan Surfaces And An Age-Related Stability For Cultural Resource Preservation: Nevada Test And Training Range, Nellis Air Force Base, Nevada, USA<br>--<br><a href="https://doi.org/10.1016/j.jasrep.2015.05.002" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1016/j.jasrep.2015.</span><span class="invisible">05.002</span></a> &lt;-- 2015 shared paper<br>--<br>[during a presentation recently, I was reminded of this 2015 paper’s content today (on which I was a co-author), back when papers wanted B&amp;W images; I wonder how we might have proceeded now, with AI / Machine Learning…]<br><a href="https://techhub.social/tags/GIS" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GIS</span></a> <a href="https://techhub.social/tags/spatial" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>spatial</span></a> <a href="https://techhub.social/tags/mapping" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>mapping</span></a> <a href="https://techhub.social/tags/Nevada" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Nevada</span></a> <a href="https://techhub.social/tags/USA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>USA</span></a> <a href="https://techhub.social/tags/military" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>military</span></a> <a href="https://techhub.social/tags/NellisAFB" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NellisAFB</span></a> <a href="https://techhub.social/tags/NAFB" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NAFB</span></a> <a href="https://techhub.social/tags/NTTR" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NTTR</span></a> <a href="https://techhub.social/tags/archaeology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>archaeology</span></a> <a href="https://techhub.social/tags/spatialanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>spatialanalysis</span></a> <a href="https://techhub.social/tags/spatiotemporal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>spatiotemporal</span></a> <a href="https://techhub.social/tags/corrleation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>corrleation</span></a> <a href="https://techhub.social/tags/basinandrange" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>basinandrange</span></a> <a href="https://techhub.social/tags/geomorphology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>geomorphology</span></a> <a href="https://techhub.social/tags/sediment" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>sediment</span></a> <a href="https://techhub.social/tags/alluvialfans" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>alluvialfans</span></a> <a href="https://techhub.social/tags/sheetwash" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>sheetwash</span></a> <a href="https://techhub.social/tags/eolian" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>eolian</span></a> <a href="https://techhub.social/tags/erosion" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>erosion</span></a> <a href="https://techhub.social/tags/deposition" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>deposition</span></a> <a href="https://techhub.social/tags/bioturbation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioturbation</span></a> <a href="https://techhub.social/tags/varnish" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>varnish</span></a> <a href="https://techhub.social/tags/desert" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>desert</span></a> <a href="https://techhub.social/tags/desertvarnish" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>desertvarnish</span></a> <a href="https://techhub.social/tags/age" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>age</span></a> <a href="https://techhub.social/tags/dating" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>dating</span></a> <a href="https://techhub.social/tags/corrleation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>corrleation</span></a> <a href="https://techhub.social/tags/airforce" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>airforce</span></a> <a href="https://techhub.social/tags/indigeneous" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>indigeneous</span></a> <a href="https://techhub.social/tags/sampling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>sampling</span></a> <a href="https://techhub.social/tags/cosmogenic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>cosmogenic</span></a> <a href="https://techhub.social/tags/10Be" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>10Be</span></a> <a href="https://techhub.social/tags/insitu" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>insitu</span></a> <a href="https://techhub.social/tags/StonewallFlat" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>StonewallFlat</span></a> <a href="https://techhub.social/tags/fans" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>fans</span></a> <a href="https://techhub.social/tags/water" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>water</span></a> <a href="https://techhub.social/tags/hydrology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>hydrology</span></a> <a href="https://techhub.social/tags/arid" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>arid</span></a> <a href="https://techhub.social/tags/imageanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>imageanalysis</span></a> <a href="https://techhub.social/tags/CulturalResource" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CulturalResource</span></a> <a href="https://techhub.social/tags/Preservation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Preservation</span></a></p>
Moritz Negwer<p>Very excited that our whole-mouse-brain analysis pipeline - DELiVR - is published now at Nature Methods. With DELiVR, we built an open-source, easy-to-use pipeline for analyzing image stacks from cleared mouse brains. </p><p>Paper: <a href="https://www.nature.com/articles/s41592-024-02245-2" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">nature.com/articles/s41592-024</span><span class="invisible">-02245-2</span></a> <br>Code: <a href="https://github.com/erturklab/delivr_cfos" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/erturklab/delivr_cf</span><span class="invisible">os</span></a><br>Docker containers, test dataset, handbook: <a href="https://www.discotechnologies.org/DELiVR/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">discotechnologies.org/DELiVR/</span><span class="invisible"></span></a></p><p><a href="https://mstdn.science/tags/neuroscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuroscience</span></a> <a href="https://mstdn.science/tags/tissueclearing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>tissueclearing</span></a> <a href="https://mstdn.science/tags/lightsheet" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>lightsheet</span></a> <a href="https://mstdn.science/tags/imageanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>imageanalysis</span></a></p>
Virgile Andreani<p><span class="h-card" translate="no"><a href="https://fosstodon.org/@napari" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>napari</span></a></span> (a <span class="h-card" translate="no"><a href="https://mastodon.social/@NumFOCUS" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>NumFOCUS</span></a></span> sponsored project) is a package I didn't know I needed, but which I can't live without anymore.<br>Super useful to visualize N-dimensional microscopy images (x, y, z, t, channel, scene).<br>I use it as a standalone viewer to visualize microscope images, but also during debugging, napari.imshow(image_array) spawns the viewer and this is so much more convenient than matplotlib!<br>There seems to be a healthy ecosystem of plugins too :)</p><p><a href="https://fosstodon.org/tags/Python" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Python</span></a> <a href="https://fosstodon.org/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageAnalysis</span></a> <a href="https://fosstodon.org/tags/Microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Microscopy</span></a> <a href="https://fosstodon.org/tags/CellBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CellBiology</span></a></p>
Virgile Andreani<p>Today I fixed two independent bugs where the error was by half a pixel in both cases. The ratio `satisfaction / usefulness` of this day of work is not quite infinite but it is very high.</p><p><a href="https://fosstodon.org/tags/SoftwareDevelopment" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SoftwareDevelopment</span></a> <a href="https://fosstodon.org/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageAnalysis</span></a></p>
Anna Dorofeeva<p>The university of Göttingen is offering two 2-year early-career postdoc positions for women doing research in the humanities: <a href="https://www.uni-goettingen.de/en/122481.html" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">uni-goettingen.de/en/122481.ht</span><span class="invisible">ml</span></a>. If you’d be interested in coming to work at the Institute for Digital Humanities (<a href="https://www.uni-goettingen.de/de/597374.html" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">uni-goettingen.de/de/597374.ht</span><span class="invisible">ml</span></a>) - especially in the areas of <a href="https://mastodon.online/tags/imageanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>imageanalysis</span></a> or digital <a href="https://mastodon.online/tags/palaeography" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>palaeography</span></a> - send us a CV and project sketch by end of February at the latest.</p><p>Deadline: April 1.</p><p><span class="h-card" translate="no"><a href="https://a.gup.pe/u/medievodons" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>medievodons</span></a></span> <span class="h-card" translate="no"><a href="https://a.gup.pe/u/histodons" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>histodons</span></a></span> <a href="https://mastodon.online/tags/digitalhumanities" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>digitalhumanities</span></a> <a href="https://mastodon.online/tags/dh" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>dh</span></a> <a href="https://mastodon.online/tags/job" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>job</span></a></p>
Fabrizio Musacchio<p>In May, there is a course on <a href="https://sigmoid.social/tags/DeepLearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DeepLearning</span></a> for <a href="https://sigmoid.social/tags/Microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Microscopy</span></a> <a href="https://sigmoid.social/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageAnalysis</span></a> (EMBO-DL4MIA) by <a href="https://sigmoid.social/tags/EMBO" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EMBO</span></a>. </p><p>🌍 <a href="https://humantechnopole.it/en/trainings/deep-learning-for-microscopy-image-analysis-embo-dl4mia/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">humantechnopole.it/en/training</span><span class="invisible">s/deep-learning-for-microscopy-image-analysis-embo-dl4mia/</span></a><br>📍Human Technopole, Milan, Italy, In presence<br>📆 Date: 08/05/2024 - 16/05/2024<br>⏰ Registration Deadline: 04/02/2024</p><p><a href="https://sigmoid.social/tags/neuroscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuroscience</span></a> <a href="https://sigmoid.social/tags/BioimageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>BioimageAnalysis</span></a></p>
💧🌏 Greg Cocks<p>Spatially Balanced Sampling And Ground-Level Imagery For Vegetation Monitoring On Reclaimed Well Pads<br>--<br><a href="https://doi.org/10.1111/rec.12956" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">doi.org/10.1111/rec.12956</span><span class="invisible"></span></a> &lt;-- shared paper<br>--<br><a href="https://techhub.social/tags/GIS" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GIS</span></a> <a href="https://techhub.social/tags/spatial" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>spatial</span></a> <a href="https://techhub.social/tags/mapping" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>mapping</span></a> <a href="https://techhub.social/tags/energy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>energy</span></a> <a href="https://techhub.social/tags/oilandgas" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>oilandgas</span></a> <a href="https://techhub.social/tags/oilandgasindustry" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>oilandgasindustry</span></a> <a href="https://techhub.social/tags/oilandgasexploration" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>oilandgasexploration</span></a> <a href="https://techhub.social/tags/wellpads" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wellpads</span></a> <a href="https://techhub.social/tags/reclamation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>reclamation</span></a> <a href="https://techhub.social/tags/spatialanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>spatialanalysis</span></a> <a href="https://techhub.social/tags/naturalgas" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>naturalgas</span></a> <a href="https://techhub.social/tags/development" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>development</span></a> <a href="https://techhub.social/tags/northamerica" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>northamerica</span></a> <a href="https://techhub.social/tags/USWest" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>USWest</span></a> <a href="https://techhub.social/tags/landuse" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>landuse</span></a> <a href="https://techhub.social/tags/ownership" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ownership</span></a> <a href="https://techhub.social/tags/stakeholders" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>stakeholders</span></a> <a href="https://techhub.social/tags/vegetation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>vegetation</span></a> <a href="https://techhub.social/tags/metric" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metric</span></a> <a href="https://techhub.social/tags/esosystem" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>esosystem</span></a> <a href="https://techhub.social/tags/SamplePoint" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SamplePoint</span></a> <a href="https://techhub.social/tags/systematic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>systematic</span></a> <a href="https://techhub.social/tags/sampling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>sampling</span></a> <a href="https://techhub.social/tags/imageanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>imageanalysis</span></a> <a href="https://techhub.social/tags/remotesensing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>remotesensing</span></a> <a href="https://techhub.social/tags/spatialstatistics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>spatialstatistics</span></a> <a href="https://techhub.social/tags/monitoring" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>monitoring</span></a> <a href="https://techhub.social/tags/regulations" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>regulations</span></a> <a href="https://techhub.social/tags/seeding" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>seeding</span></a> <a href="https://techhub.social/tags/costs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>costs</span></a> <a href="https://techhub.social/tags/naturalresources" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>naturalresources</span></a> <a href="https://techhub.social/tags/standardprotocols" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>standardprotocols</span></a> <a href="https://techhub.social/tags/defensibility" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>defensibility</span></a> <a href="https://techhub.social/tags/costsavings" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>costsavings</span></a> <a href="https://techhub.social/tags/observerbias" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>observerbias</span></a> <a href="https://techhub.social/tags/GPS" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GPS</span></a> <a href="https://techhub.social/tags/camera" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>camera</span></a> <a href="https://techhub.social/tags/Wyoming" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Wyoming</span></a> <a href="https://techhub.social/tags/WY" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>WY</span></a></p>
Karsten Schmidt<p>New <a href="https://mastodon.thi.ng/tags/ThingUmbrella" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ThingUmbrella</span></a> example (#147): Computing the RGB waveform[1] of an image using slit scanning &amp; column-based histograms via <a href="https://thi.ng/pixel" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">thi.ng/pixel</span><span class="invisible"></span></a> &amp; <a href="https://thi.ng/transducers" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">thi.ng/transducers</span><span class="invisible"></span></a>.</p><p>Demo (images are only processed locally on your own device):<br><a href="https://demo.thi.ng/umbrella/pixel-waveform/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">demo.thi.ng/umbrella/pixel-wav</span><span class="invisible">eform/</span></a></p><p>Source code:<br><a href="https://github.com/thi-ng/umbrella/blob/develop/examples/pixel-waveform/src/index.ts" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/thi-ng/umbrella/blo</span><span class="invisible">b/develop/examples/pixel-waveform/src/index.ts</span></a></p><p>This is by far not the fastest way to compute this, but it explains the principle approach more clearly. Almost exactly 13 years ago (to the day), I used the same with Java and my toxiclibs to transform images, driving altogether 768 granular oscillators to create super complex, constantly morphing drone sounds. Some selected audio snippets &amp; images are here:</p><p><a href="https://soundcloud.com/toxi/sets/granular-synthesis" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">soundcloud.com/toxi/sets/granu</span><span class="invisible">lar-synthesis</span></a><br><a href="https://www.flickr.com/photos/toxi/sets/72157625235467871/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">flickr.com/photos/toxi/sets/72</span><span class="invisible">157625235467871/</span></a></p><p>[1] It's called "waveform scope" in Adobe Premiere, even though the term is misleading...</p><p><a href="https://mastodon.thi.ng/tags/ThingUmbrella" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ThingUmbrella</span></a> <a href="https://mastodon.thi.ng/tags/ImageProcessing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageProcessing</span></a> <a href="https://mastodon.thi.ng/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageAnalysis</span></a> <a href="https://mastodon.thi.ng/tags/Audio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Audio</span></a> <a href="https://mastodon.thi.ng/tags/GranularSynthesis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GranularSynthesis</span></a> <a href="https://mastodon.thi.ng/tags/Drone" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Drone</span></a> <a href="https://mastodon.thi.ng/tags/DSP" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DSP</span></a> <a href="https://mastodon.thi.ng/tags/TypeScript" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>TypeScript</span></a> <a href="https://mastodon.thi.ng/tags/JavaScript" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>JavaScript</span></a> <a href="https://mastodon.thi.ng/tags/OpenSource" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenSource</span></a></p>
Patrick Martin<p>I might as well have make a pinned post. </p><p>We published Vesalius a tool that uses Image analysis methods to analyze spatial-omics data.</p><p>A new version will be coming soon that will include multimodal analysis and alignment!</p><p>GitHub: <a href="https://patrickcnmartin.github.io/Vesalius/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">patrickcnmartin.github.io/Vesa</span><span class="invisible">lius/</span></a></p><p>MSB: <a href="https://www.embopress.org/doi/full/10.15252/msb.202211080" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">embopress.org/doi/full/10.1525</span><span class="invisible">2/msb.202211080</span></a></p><p><a href="https://sigmoid.social/tags/SpatialTranscriptomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SpatialTranscriptomics</span></a> <a href="https://sigmoid.social/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageAnalysis</span></a></p>
Stephen Royle<p><a href="https://biologists.social/tags/Introduction" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Introduction</span></a> (just moved to new instance)</p><p>I am a cell biologist running a research group (<span class="h-card"><a href="https://mstdn.science/@roylelab" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>roylelab</span></a></span>) focused on membrane traffic and cell division in human cells. My lab is in <span class="h-card"><a href="https://mstdn.science/@Warwick_CMCB" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>Warwick_CMCB</span></a></span> at <a href="https://biologists.social/tags/WarwickUni" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>WarwickUni</span></a>. My posts are mainly about <a href="https://biologists.social/tags/science" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>science</span></a> and <a href="https://biologists.social/tags/CellBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CellBiology</span></a> but also <a href="https://biologists.social/tags/music" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>music</span></a>, <a href="https://biologists.social/tags/running" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>running</span></a> and <a href="https://biologists.social/tags/cycling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>cycling</span></a>.</p><p>My previous handle was clathrin. For my data analysis alter-ego, follow <span class="h-card"><a href="https://fosstodon.org/@quantixed" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>quantixed</span></a></span>.</p><p><a href="https://biologists.social/tags/Microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Microscopy</span></a> <a href="https://biologists.social/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ImageAnalysis</span></a> <a href="https://biologists.social/tags/MembraneTraffic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MembraneTraffic</span></a> <a href="https://biologists.social/tags/Mitosis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Mitosis</span></a> <a href="https://biologists.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenScience</span></a> <a href="https://biologists.social/tags/RStats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RStats</span></a></p>
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